`Patent 9,976,125 B2 Entered: July 16, 2020
`
`
`RECORD OF ORAL HEARING
`
`U.S. PATENT AND TRADEMARK OFFICE
`____________
`
`BEFORE THE PATENT TRIAL AND APPEAL BOARD
`____________
`
`LIFESCAN GLOBAL CORPORATION,
`Petitioner,
`
`v.
`
`IKEDA FOOD RESEARCH, LTD.,
`and PHC CORPORATION,
`Patent Owner.
`____________
`
`PGR 2019-00032
`Patent 9,976,125 B2
`____________
`
`Oral Hearing Held: June 18, 2020
`____________
`
`Before DAVID COTTA, ROBERT A. POLLOCK and ERICA A.
`FRANKLIN, Administrative Patent Judges.
`
`APPEARANCES:
`
`ON BEHALF OF THE PETITIONER:
`
`
`AARON S. ECKENTHAL, ESQUIRE
`Lerner David Littenberg Krumholz & Mentlik
`20 Commerce Drive
`Cranford, NJ 07016
`
`
`
`
`
`1
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`ON BEHALF OF THE PATENT OWNER:
`
`
`KENNETH P. GEORGE, ESQUIRE
`Amster Rothstein and Ebenstein
`90 Park Avenue, 21st Floor
`New York, NY 10016
`
`
`
`
`
`The above-entitled matter came on for hearing on Thursday, June 18,
`2020, commencing at 1:00 p.m. EDT, by video/by telephone.
`
`
`
`2
`
`
`
`PGR 2019-00032 Paper 37
`Patent 9,976,125 B2 Entered: July 16, 2020
`
`
`
`
`
`
`
`
`P R O C E E D I N G S
`
`- - - - -
`JUDGE COTTA: So, do we have everyone on the line who's
`
`supposed to be on the line?
`
`MR. GEORGE: This is Kenneth George representing the patent
`
`1
`
`2
`3
`4
`5
`
`6
`7
`
`8
`
`9
`
`10
`
`owners. I'm on the line.
`
`11
`
`MR. ECKENTHAL: Hi, this is Aaron Eckenthal representing
`
`12
`
`petitioner.
`
`13
`
`JUDGE COTTA: Okay, thank you. Okay, let's get started then.
`
`14
`
`Good afternoon, this the final hearing in PGR2019-00032, regarding
`
`15
`
`Substitute Claim 11 of U.S. Patent Number 9,976,125. The petitioner is
`
`16
`
`Lifescan Global Corporation. The patent owners are Ikeda Food Research
`
`17
`
`Company, Limited and PHC Corporation. The hearing is open to the public
`
`18
`
`and a full transcript of the hearing will be made of record. I'm Judge Cotta
`
`19
`
`and with me are Judges Pollock and Franklin.
`
`20
`
`Counsel for the petitioner, would you please identify yourself for the
`
`21
`
`record?
`
`22
`
`MR. ECKENTHAL: Yes, good afternoon, Your Honors. My name is
`
`23
`
`Aaron Eckenthal from the law firm of Lerner David representing Lifescan
`
`24
`
`Global Corporation.
`
`25
`
`JUDGE COTTA: Thank you. And counsel for the patent owner,
`
`26
`
`could you kindly identify yourself for the record as well?
`
`27
`
`MR. GEORGE: Yes, Kenneth George with Amster Rothstein and
`
`28
`
`Ebenstein, counsel for the patent owners.
`
`
`
`3
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`JUDGE COTTA: Okay. So, as set forth in our hearing order of May
`
`12, 2020, each side has 45 minutes to present its case. My colleagues and I
`
`will do our best to keep track of time, but we suggest that the parties do the
`
`same.
`
`Counsel for the petitioner, would you like to reserve any time for
`
`rebuttal?
`
`MR. ECKENTHAL: Yes, I would, Your Honor. I'd like to reserve 15
`
`minutes for rebuttal.
`
`JUDGE COTTA: Okay. And counsel for patent owner, you may
`
`10
`
`have the last word today if you'd like it. Would you like to reserve any
`
`11
`
`time?
`
`12
`
`13
`
`MR. GEORGE: Yes, 10 minutes, thank you.
`
`JUDGE COTTA: Okay. Before we begin, there are a few things I'd
`
`14
`
`like to cover. First, on behalf of the board, I'd like to thank everyone for
`
`15
`
`their flexibility in participating in this all video hearing. Given that this is a
`
`16
`
`departure from our typical practice, I'd like to emphasize that our primary
`
`17
`
`concern is your right to be heard. So, if at any point during the proceeding
`
`18
`
`you encounter technical difficulties or other difficulties that you feel
`
`19
`
`undermine your ability to represent your client adequately, please let us
`
`20
`
`know.
`
`21
`
`Second, if you're not speaking, please mute your microphone so we
`
`22
`
`have a clearer connection. Third, and please try to identify yourself each
`
`23
`
`time you speak. We will do the same for the benefit of the record. Fourth,
`
`24
`
`we have access to the entire record, including demonstratives. So, when you
`
`25
`
`refer to each demonstrative, paper, or exhibit, please do so by slide or page
`
`26
`
`number and allow us a few seconds to find it. Finally, if you come to a good
`
`
`
`4
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`faith belief that the pace of this proceeding prevents you from adequately
`
`explaining your position, please speak up and we'll consider extending the
`
`allotted time.
`
`Petitioner will go first as it bears the burden of showing
`
`unpatentability of the challenged claims. So, petitioner, you can begin
`
`whenever you are ready.
`
`MR. ECKENTHAL: Thank you, Your Honor. Good afternoon. As
`
`we heard before, my name is Aaron Eckenthal and I am from the law firm of
`
`Lerner David representing the petitioner in this case, Lifescan Global
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`Corporation. And as Your Honor just stated, it seems that you have access
`
`11
`
`to the demonstratives so, I'm going to refer to those throughout today's
`
`12
`
`presentation.
`
`13
`
`I'd like to start with slide number 2. Just to touch on the 125 patent
`
`14
`
`briefly here in the fact that it relates to an FAD-conjugated glucose
`
`15
`
`dehydrogenase, which is a specific enzyme that's used in a biosensor and its
`
`16
`
`ability is to detect glucose. And through patent owner's amendments here, I
`
`17
`
`think the overall issue is really quite narrow. And Your Honors seem to
`
`18
`
`have really zeroed-in on this precise dispute between the parties at this point
`
`19
`
`as having to do with the particular FAD-conjugated GDH enzyme. Which in
`
`20
`
`this case at issue is Aspergillus oryzae NBRC 30104.
`
`21
`
`And I will address the points that the board sought to be addressed
`
`22
`
`earlier this week in their email. But I just want to give some context to
`
`23
`
`patent owner's amendments. And the amendments made to Substitute Claim
`
`24
`
`11, which is really original Claim 8 that's been rewritten into independent
`
`25
`
`form, focuses on two particular aspects in addition that have been amended
`
`26
`
`from the original claim.
`
`
`
`5
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`One is the polypeptide sequence. And the second has to do with the
`
`enzymatic activity from maltose. And then in patent owner's Revised
`
`Motion to Amend, which is seen here on slide 2, they further narrowed the
`
`polypeptide sequence to one form in particular, which is a strain --
`
`polypeptide from a particular strain of aspergillus oryzae. In this case,
`
`again, 30104, but they kept the same amendment with respect to the maltose
`
`limitation of 5 percent or less.
`
`So, if we turn to slide 3 here, we can now look at patent owner's
`
`proposed amendment to Claim 11 in a little more detail. And in particular,
`
`10
`
`the polypeptide because that's really where this dispute lies. So, patent
`
`11
`
`owner started off with a polypeptide sequence, SEQ ID NO:1 in this
`
`12
`
`particular case, and also, those that are 90 percent or more homologous.
`
`13
`
`And with each amendment they went through, they narrowed the sequence,
`
`14
`
`recognizing first the unpatentable nature of SEQ ID NO:1. And then patent
`
`15
`
`owner's amendment to deal with the homologues of it. And then the current
`
`16
`
`presented claim in its Revised Motion to Amend, which limits the sequence
`
`17
`
`to a particular FAD-conjugated GDH from Aspergillus oryzae 30104.
`
`18
`
`And what's important to note about this amendment here is that you
`
`19
`
`see this yellow highlighting on the slide. And pretty much everything after
`
`20
`
`this slide on this top part here is -- does not really serve to limit the claim
`
`21
`
`any further. You have a sequence that's recited that is really the structure of
`
`22
`
`the FAD-conjugated GDH that's present. And you have the functionality of
`
`23
`
`it that the FAD-conjugated GDH at the bottom part of this claim here has
`
`24
`
`glucose dehydrogenase activity. And all of that is just a mere result of
`
`25
`
`having the FAD-conjugated GDH from this particular strain.
`
`
`
`6
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`But even if these are considered limitations somehow, which patent
`
`owner -- petitioner does not believe they are limiting at all, a POSA would
`
`have knowledge to know that these aspects are present just based on its
`
`general knowledge. And we've also -- petitioner here has also presented
`
`evidence from its expert, Dr. LaBelle, that such properties here, after this
`
`yellow highlighting, are either inherent from the particular species, or that
`
`the POSA would know how to obtain that particular sequence from the
`
`particular species and strain.
`
`So, to summarize patent owner's Substitute Claim 11, and just to turn
`
`10
`
`back to slide 2 for a brief moment here, it really is three different aspects.
`
`11
`
`The first is a biosensor comprising a recombinant FAD GDH. And the
`
`12
`
`second part is the recombinant FAD GDH from having a polypeptide from
`
`13
`
`Aspergillus oryzae NBRC 30104. And then the final part, which was from
`
`14
`
`original Claim 8, is the pH aspect at the very bottom of this claim where the
`
`15
`
`biosensor is capable of detecting glucose by a pH change.
`
`16
`
`The remainder of these amendments that you see here in the claim
`
`17
`
`really just serve to make it appear that patent owner is claiming much more
`
`18
`
`than it really is. And although the patent owner in this case want the focus
`
`19
`
`on aspects after what we saw in the yellow highlighting on slide 3, those
`
`20
`
`aspects don't serve to limit the claim. So, we would submit to you that such
`
`21
`
`a focus would be misplaced. So, in that context, the obviousness inquiry
`
`22
`
`here really focuses on what was known by a POSA about the sources of
`
`23
`
`FAD-conjugated GDH, and also, what was known by a POSA about the
`
`24
`
`functional equivalents of FAD-conjugated GDH.
`
`25
`
`So, if we turn to slide 5 here, we can begin with what a POSA knew
`
`26
`
`about sources of FAD-conjugated GDH from some of the prior art that's of
`
`
`
`7
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`record here. And although Aspergillus oryzae was first appreciated in the
`
`1800s, it was recognized that there were multiple strains in the early 1900s
`
`and in the 1950s and '60s, it was appreciated that it possessed this enzyme
`
`for glucose sensing. And the art of record, first Ogura in the 1950s,
`
`followed by Bak in the 1960s, appreciated the glucose reactivity of
`
`conjugated GDH derived from Aspergillus oryzae. And that that specific
`
`enzyme can be used in biosensors to detect glucose.
`
`And then we move on to Senior, which is also of record in this
`
`proceeding. And Senior appreciated the use of FAD-conjugated GDH
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`enzyme in a biosensor and that Aspergillus oryzae -- sorry, Aspergillus, in
`
`11
`
`general, as a genus, is a source for that particular enzyme. So, Senior
`
`12
`
`discloses that FAD-conjugated GDH is not just in the oryzae species. And
`
`13
`
`this is also confirmed by Omura, which is also of record here. And Omura
`
`14
`
`somewhat ties together Bak and Senior in this respect. And demonstrates
`
`15
`
`that the FAD-conjugated GDH in Aspergillus, you see it at the genus level.
`
`16
`
`Because in Omura, it's noted that this particular enzyme is present in two
`
`17
`
`different species of Aspergillus, the species of terreus and oryzae.
`
`18
`
`So, what does this mean for a POSA? Well, it means that a POSA
`
`19
`
`would have appreciated that there is a large degree of conservation among
`
`20
`
`Aspergillus. And if FAD-conjugated GDH is conserved at the genus level,
`
`21
`
`as recognized by Senior and by Omura, it's most likely conserved at the
`
`22
`
`species level and at the strain level. So, when you look at the specific strain
`
`23
`
`in this case, which is Aspergillus oryzae NBRC 30104, this is one of the
`
`24
`
`oldest and well known strains of Aspergillus.
`
`25
`
`So, if you turn to slide 6, slide 6 here, you know, it shows that NBRC
`
`26
`
`30104 was known since 1876. When it was first isolated, it was called RIB
`
`
`
`8
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`430. Again, someone else thought they had isolated a unique strain in 1976.
`
`They called it NBRC 30104. Certain databases categorize all these strains
`
`and the NITE database recognized that 30104 and the RIB 430 strains are,
`
`indeed, one and the same.
`
`JUDGE COTTA: Counsel, do you have --
`
`MR. ECKENTHAL: So, --
`
`JUDGE COTTA: If I can interrupt for a second? Do you have any
`
`evidence that --
`
`MR. ECKENTHAL: Sure.
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`JUDGE COTTA: -- it would have been obvious to select any
`
`11
`
`particular strain of Aspergillus oryzae? Or are you relying primarily on the
`
`12
`
`substitution of equivalents?
`
`13
`
`MR. ECKENTHAL: We are relying on the substitution that it is an
`
`14
`
`equivalent functionality for any Aspergillus oryzae, for any FAD-conjugated
`
`15
`
`GDH, from any Aspergillus oryzae. I mean, when you start looking at the
`
`16
`
`evidence as we're going to see. I'm going to continue going through that.
`
`17
`
`You know, it becomes pretty apparent to a POSA that these particular
`
`18
`
`enzymes are present in Aspergillus across the board. And it would be
`
`19
`
`obvious to simply substitute one for the other. There's no distinction on this
`
`20
`
`record as to differences in functionality between any of these FAD-
`
`21
`
`conjugated GDHs. And in fact, --
`
`22
`
`23
`
`24
`
`JUDGE COTTA: So, can I --
`
`MR. ECKENTHAL: Sure.
`
`JUDGE COTTA: Can I interrupt you again? So, Table 1 of the 125
`
`25
`
`patent has -- identifies a number of different strains of Aspergillus oryzae
`
`26
`
`and --
`
`
`
`9
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`MR. ECKENTHAL: Mm-hmm.
`
`JUDGE COTTA: -- indicates that FAD-conjugated glucose
`
`dehydrogenase has activity in some of them, but not in others. How do you
`
`reconcile that with your substitution of equivalents argument?
`
`MR. ECKENTHAL: So, I think we've reconciled that. And the
`
`testimony of our expert, Dr. LaBelle, speaks more clearly to this in his
`
`declaration in Exhibit 1031 in that there are some -- well, that table is
`
`speaking toward activity level versus functionality. And just because a
`
`FAD-conjugated GDH -- Your Honors, are you still with me here? Because
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`I seem to have to lost video. I just want to confirm that you can still hear
`
`11
`
`me.
`
`12
`
`13
`
`14
`
`sorry.
`
`JUDGE COTTA: I can still hear you and I can still see you.
`
`MR. ECKENTHAL: Okay. There you go. Now you're back. So, --
`
`15
`
`Table 1 just because there's an active FAD-conjugated GDH, that's
`
`16
`
`different from functionality. And in that table, what we're seeing is whether
`
`17
`
`or not an FAD-conjugated GDH is active. And for activity, there are a host
`
`18
`
`of other aspects that play into whether a gene, and in this case, the FAD-
`
`19
`
`conjugated GDH, becomes active. Such as the conditions that the organism
`
`20
`
`was grown in, or in this case, the specific strain was grown in. So, light
`
`21
`
`could impact that. Different nutrients in which it was grown in may impact
`
`22
`
`whether or not a FAD-conjugated GDH is active. Table 1 and the one -- and
`
`23
`
`this particular patent do not examine the functionality of it. And in fact,
`
`24
`
`when you start looking at whether or not there's a functional versus -- or,
`
`25
`
`sorry, an active FAD-conjugated GDH in Table 1, versus an inactive one,
`
`26
`
`nothing there deals with functionality.
`
`
`
`10
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`Patent owner, in fact, doesn't deal with the functionality of them and
`
`deals with them all one and the same. And that's actually shown through the
`
`course of the amendments that have been presented in this particular case.
`
`Where patent owner first started with SEQ ID NO:1 and then went to -- with
`
`90 percent homology to that sequence, through the amendments have
`
`admitted that Claim 1 -- sorry, SEQ ID NO:1 is unpatentable. And has then
`
`tried to go after just the homologues of SEQ ID NO:1 to where we now have
`
`a claim reciting a specific Aspergillus oryzae strain and -- or the FAD-
`
`conjugated GDH from that -- from a particular strain.
`
`10
`
`So, the claim has gotten narrower and narrower. And what they've
`
`11
`
`tried to do here is initially tried to capture all the homology to SEQ ID
`
`12
`
`NO:1, which in this case, is really all functional equivalents. And when you
`
`13
`
`start looking at these things, you know, they all -- just because they have the
`
`14
`
`different amino acid sequences, it might be different at the amino acid
`
`15
`
`sequence level as shown in example 6 in the patent. And then, you know,
`
`16
`
`that dovetails into Table 1. What you will see is that these small variations
`
`17
`
`in amino acid sequences don't have any impact on the functionality.
`
`18
`
`So, when you're looking at the overall functionality of it, you don't
`
`19
`
`even need to get to the amino acid sequence. You know, it's simply all of
`
`20
`
`these are functional equivalents of one another. There is no unexpected
`
`21
`
`result that is discussed in the patent disclosure. And in fact, there is no
`
`22
`
`unexpected result here. When you start switching out one FAD-conjugated
`
`23
`
`GDH in place of another, as long as it's active and functional, you would be
`
`24
`
`-- you know, you would expect to achieve what you have here, which is a
`
`25
`
`biosensor with the NBRC 30104 strain, or any other strain, you know, for
`
`26
`
`that matter.
`
`
`
`11
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`Does that answer your question, Your Honor?
`
`JUDGE COTTA: I think so. Is it your contention that the person of
`
`skill in the art would just know not to use a strain that's shown to be
`
`inactive?
`
`MR. ECKENTHAL: Well, Your Honor, I mean, I don't know that a
`
`POSA would know not to use a strain that's inactive. I mean, I think a
`
`POSA would have a reasonable belief overall that a -- that FAD-conjugated
`
`GDH is present in Aspergillus oryzae regardless of the strain, okay? I think
`
`once they start investigating them, you know, you can see whether one is
`
`10
`
`active, whether one is not active. And, of course, again, activity depends
`
`11
`
`upon how it was grown. So, just because Table 1 shows that some of them
`
`12
`
`are inactive, it might be that those are inactive just strictly based on how
`
`13
`
`those were grown and cultured in this particular instance, right? So, if you
`
`14
`
`grow them and culture that particular strain, under different conditions,
`
`15
`
`perhaps it leads to a functional or in this case, active and functional GDH.
`
`16
`
`And I think one of the --
`
`17
`
`18
`
`19
`
`20
`
`21
`
`JUDGE POLLOCK: This is Judge Pollock. Can I jump in --
`
`MR. ECKENTHAL: Sure.
`
`JUDGE POLLOCK: -- just for a second? Just to clarify, --
`
`MR. ECKENTHAL: Sure.
`
`JUDGE POLLOCK: -- it was known in the art that NRBC 30104 did
`
`22
`
`have FAD-conjugated glucose dehydrogenase activity, correct?
`
`23
`
`MR. ECKENTHAL: It was known generally that Aspergillus oryzae
`
`24
`
`has FAD-conjugated GDH, okay? And that was known -- it was shown
`
`25
`
`across the board that -- and I think a POSA would recognize this, that it's
`
`26
`
`very fairly conserved amongst Aspergillus at the genus level. And that's
`
`
`
`12
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`demonstrated by Omura, okay? So, if it's conserved at the genus level and
`
`when you drill down at the species level, as shown by Omura, when you
`
`have Aspergillus terreus and Aspergillus oryzae, I believe both of those
`
`show that it is a strong likelihood that a POSA would have a reasonable
`
`belief that all Aspergillus oryzae, including 30104, have the FAD-
`
`conjugated GDH.
`
`JUDGE POLLOCK: But the art of record does not expressly call out
`
`NBRC as having this activity?
`
`MR. ECKENTHAL: That is correct. It doesn't call out for it
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`specifically having this reactivity. But, again, I think that it's strongly -- a
`
`11
`
`POSA would recognize that it is most likely that it would have it, as all of
`
`12
`
`the other strain -- or other strains of Aspergillus oryzae of record show that it
`
`13
`
`does have it. And I think from there, a POSA would recognize given the
`
`14
`
`conservative aspect of it and the functionality that's been demonstrated
`
`15
`
`across the board from these other references, Ogura, Bak, Senior, and
`
`16
`
`Omura, and even Tsuji, for that matter, that you could take any one of these
`
`17
`
`strains from Aspergillus oryzae so there is a reasonable likelihood that this
`
`18
`
`particular gene is in there. And you could then use that based on the known
`
`19
`
`functionality of it, because these are all functional equivalents. There's
`
`20
`
`nothing in the art that says that these are not functional equivalents and
`
`21
`
`there's nothing unexpected about using this particular Aspergillus oryzae
`
`22
`
`30104, and use it in a biosensor as recited in patent owner's Substitute Claim
`
`23
`
`11.
`
`24
`
`25
`
`JUDGE POLLOCK: Thank you very much for clarifying that.
`
`MR. ECKENTHAL: Okay. So, I think from -- so, what I'd like to do
`
`26
`
`is I want to get back to this. And I want to turn to what a POSA would have
`
`
`
`13
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`known about the functionality aspect of the FAD-conjugated GDH enzymes.
`
`And I think I may have touched on some of this. But I just want to, again,
`
`be clear about this. You know, when we look at Omura, there is a clear
`
`suggestion to a POSA that the GDH from Aspergillus oryzae and
`
`Aspergillus oryzae is functionally the same. You know, again, this is --
`
`well, Omura describes this functionality that it's different only with respect
`
`to the stability of these different enzymes has nothing to do with the
`
`functionality of the actual glucose dehydrogenase activity. So, again, this is
`
`also consistent with and further demonstrates Senior's recognition that
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`Aspergillus at the genus level is a source of FAD-conjugated GDH enzyme.
`
`11
`
`So, again, none of these references of record, and there is nothing on
`
`12
`
`this record, that makes any distinction as to functionality of FAD-conjugated
`
`13
`
`GDH across the genus, the species, or the strains. So, if you take those
`
`14
`
`teachings collectively, a person of ordinary skill would recognize the high
`
`15
`
`probability that FAD-conjugated GDH would be functionally the same
`
`16
`
`across Aspergillus oryzae strains. And even if a species' specific FAD-
`
`17
`
`conjugated GDH deferred at the genomic level, those differences are likely
`
`18
`
`undetectable if the functionality is the same. So, in other words, a POSA
`
`19
`
`would have little reason to examine the FAD-conjugated enzyme at the
`
`20
`
`sequence level given the same functionality of it.
`
`21
`
`And, again, you know, with Table 1, I think, you know, the patent
`
`22
`
`owner's specification in the 125 patent enforces this exact point. And, I
`
`23
`
`mean, I don't have a slide that shows Table 1 exactly, but I presume that the
`
`24
`
`board does have the exhibits, Exhibit 1005.
`
`25
`
`JUDGE COTTA: We do.
`
`
`
`14
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`MR. ECKENTHAL: And, you know, this again is demonstrating an
`
`active versus an inactive FAD-conjugated GDH. And, you know, none of
`
`these active FAD-conjugated GDH enzymes are described as having any
`
`different functionality from one another. Each of these strains in Table 1 are
`
`compared to the NBRC 5375 strain, which in the patent it's SEQ ID NO:1.
`
`And they're all compared to this simply in passing at the amino acid level --
`
`amino acid sequence level. And, in fact, when NBRC 30104 is compared,
`
`it's shown to be identical with only two amino acid differences that does not
`
`appear to impact functionality. And, again, if you're just looking at it from a
`
`10
`
`functionality perspective, you wouldn't even get to the amino acid sequence
`
`11
`
`level.
`
`12
`
`But if you look, again, at how patent owner amended Claim 11, right,
`
`13
`
`first it's trying to capture SEQ ID NO:1 and a certain level homology. Then
`
`14
`
`just the level of homology, and now the specific sequence that's been -- this
`
`15
`
`particular sequence isn't even formally recited in the sequence listings in this
`
`16
`
`patent. It really just goes to show that they were really after SEQ ID NO:1
`
`17
`
`and known functional equivalents, such as NBRC 30104 strain. But even
`
`18
`
`though, again, they may be functional equivalents, they could still be
`
`19
`
`different at the amino acid sequence level.
`
`20
`
`So, turning to slide 9 right now, at the bottom, you know, I really want
`
`21
`
`to say what the takeaway from all this is to a POSA. And, again, that's --
`
`22
`
`there's nothing special about the functionality of FAD-conjugated GDH
`
`23
`
`from NBRC 30104 strain as compared to FAD-conjugated GDH from any
`
`24
`
`other Aspergillus oryzae strain. There's nothing of record that indicates that.
`
`25
`
`So, if a POSA understood that FAD-conjugated GDH is present in
`
`26
`
`Aspergillus, and in particular, Aspergillus oryzae, and also understood that
`
`
`
`15
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`there is no functional difference among them. We can turn to slide 10, and
`
`we see that a POSA would recognize that it could utilize any FAD-
`
`conjugated GDH from Aspergillus oryzae in the biosensor that's recited in
`
`patent owner's Substitute Claim 11. What's being done here is really nothing
`
`more than a substitute of one known element for another. And in this case,
`
`it's one known FAD-conjugated GDH for another GDH. And when you do
`
`that, a POSA would certainly expect success in achieving the bio -- a
`
`biosensor with an FAD-conjugated GDH from NBRC 30104.
`
`So, now I want to turn to -- switch gears a little bit here, and I want to
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`talk about patent owner's notion --
`
`11
`
`12
`
`13
`
`JUDGE COTTA: Just to give you a --
`
`MR. ECKENTHAL: Sure.
`
`JUDGE COTTA: Just to give you a heads up while you switch gears,
`
`14
`
`you have about five minutes left.
`
`15
`
`MR. ECKENTHAL: Okay. So, I just want to touch on patent
`
`16
`
`owner's notion that a POSA could not make a recombinant GDH. And this
`
`17
`
`is really a new argument that patent owner kind of brought up in its reply
`
`18
`
`brief here. It is a limitation that's been present from the outset. But
`
`19
`
`nevertheless, patent owner's argument that relies on the recombinant
`
`20
`
`limitations fails because it appears to rest squarely on whether an FAD-
`
`21
`
`conjugated GDH sequence from Aspergillus oryzae was known or whether a
`
`22
`
`person could obtain those sequences.
`
`23
`
`And, you know, going through the record here, I think it becomes
`
`24
`
`clear that a POSA could go about and obtain an FAD-conjugated GDH gene
`
`25
`
`from the -- from Aspergillus oryzae here. We have in slide 11, we have the
`
`26
`
`definition of a POSA, which includes how to create a recombinant, you
`
`
`
`16
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`know, because it's a -- well, the patent owner and the petitioner here are
`
`generally in agreement that this is the definition. And a POSA includes
`
`recombination -- or knowledge of recombinant DNA techniques. So, this
`
`not only includes how to create a recombinant, but also sequencing. So, the
`
`evidence of record here demonstrates that a POSA knows how to create a
`
`recombinant.
`
`Now, I just want to turn to -- I want to turn to the overall argument
`
`here as to the obviousness. I mean, now that we have this background with
`
`the sequences that have been set forth and the functionality and that, you
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`10
`
`know, what a POSA would know. Actually, before I do that, I just want to
`
`11
`
`touch on Tsuji real quick in that, you know, our expert, Dr. LaBelle,
`
`12
`
`explained that it is within the purview of a POSA to determine the sequence
`
`13
`
`of Aspergillus oryzae. And I know that patent owner seems to make a big
`
`14
`
`deal about this that it was -- that Tsuji is actually some teaching away and
`
`15
`
`that it's very difficult to obtain a sequence. But the problem with that
`
`16
`
`argument is first, that they deem that conventional techniques in Tsuji, are
`
`17
`
`really much broader than what patent owner alleges. In fact, that Tsuji used
`
`18
`
`alternative conventional techniques to obtain the sequence there. And such
`
`19
`
`alternative methods might be considered difficult and they might even be
`
`20
`
`unconventional, but that does not mean that they're not within the purview of
`
`21
`
`a POSA.
`
`22
`
`And second, Tsuji did what a POSA would do when one conventional
`
`23
`
`technique did not work. They used alternative techniques to get to the
`
`24
`
`sequence. And finally, Tsuji, who patent owner deems to be a POSA, was
`
`25
`
`able to obtain the sequence and Tsuji is prior art. So, it tells other people
`
`26
`
`how to obtain the sequence.
`
`
`
`17
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`So, given that background, if we turn to slide 16, Omura in
`
`combination with the knowledge of a POSA will render patent owner's
`
`proposed Substitute Claim 11 obvious. As we saw before, Omura teaches
`
`the elements of -- as we can see here, that it will teach the elements of the --
`
`with the exception of the NBRC 30104 strain, which again, is simply
`
`replacing a functionally known equivalent. So, if you look at slide 16 here,
`
`Omura teaches a biosensor containing recombinant FAD-conjugated GDH.
`
`If we turn to slide 17, as we already discussed, Omura teaches the genus of
`
`Aspergillus was a known source of FAD-conjugated GDH. And, likewise,
`
`10
`
`Senior also teaches a POSA that sources of FAD-conjugated GDH are from
`
`11
`
`Aspergillus.
`
`12
`
`If we switch over to slide 19, Omura teaches that a biosensor uses pH
`
`13
`
`as detection. And then again, moving to slide 20, a POSA here would be
`
`14
`
`motivated to utilize the FAD-conjugated GDH from NBRC 30104 in place
`
`15
`
`of the FAD-conjugated GDH from Terreus that's used in Omura based on
`
`16
`
`the similarities and characteristics of the enzyme. And this point is
`
`17
`
`unrebutted by patent owners throughout the proceeding. And a POSA
`
`18
`
`would also be motivated to use Omura and to swap out Aspergillus oryzae
`
`19
`
`by the desire to industrially produce coenzyme binding GDH in a
`
`20
`
`commercial expression. And considering this is merely a substitute of one
`
`21
`
`functional FAD-conjugated GDH for another as interchangeable, a POSA
`
`22
`
`here, again, would expect to achieve success.
`
`23
`
`I know I'm kind of going over my half an hour here a little bit, but I
`
`24
`
`just want to touch very briefly on Tsuji real quick. I know that's going to cut
`
`25
`
`into my time, right? But that's okay.
`
`
`
`18
`
`
`
`PGR 2019-00032
`Patent 9,976,125 B2
`
`
`1
`
`2
`
`3
`
`4
`
`5
`
`6
`
`7
`
`8
`
`9
`
`JUDGE COTTA: Yeah, you are over your time. If you want to be
`
`real quick, go ahead.
`
`MR. ECKENTHAL: Yeah, real quick. I just want to touch on Tsuji
`
`real quick. And to save time, I'm just going to touch on the aspects of Tsuji
`
`here since Omura applies in the same or similar way that we just discussed.
`
`And turning to slide 21, Tsuji teaches a biosensor containing
`
`recombinant FAD-conjugated GDH from Aspergillus oryzae. Again, slide
`
`22, Tsuji teaches a POSA how to go about obtaining the sequence from an
`
`FAD-conjugated GDH from Aspergillus oryzae. And that's regardless of the
`
`10
`
`strain. So, when we get to slide 25 here, you know, when you combine Tsuji
`
`11
`
`with Omura in view of one skilled in the art, what was known about
`
`12
`
`Aspergillus oryzae, the presence of FAD-conjugated GDH, you know, a
`
`13
`
`POSA was aware that it was present in Aspergillus oryzae. They would
`
`14
`
`recognize the conservative nature of it in Aspergillus. And, again, Claim 11
`
`15
`
`merely exchanges FAD-conjugated GDH from one strain for a known
`
`16
`
`equivalent from another.
`
`17
`
`The functionality of these is indistinguishable. So, for all of