`US 20170236281A1
`( 19 ) United States
`( 12 ) Patent Application Publication ( 10 ) Pub . No . : US 2017 / 0236281 A1
`( 43 ) Pub . Date :
`Aug . 17 , 2017
`DACOSTA
`
`( 51 )
`
`2 )
`
`( 54 ) COLLECTION AND ANALYSIS OF DATA
`FOR DIAGNOSTIC PURPOSES
`( 71 ) Applicant : UNIVERSITY HEALTH
`NETWORK , Toronto , ( CA )
`Inventor : Ralph DACOSTA , Etobicoke , Ontario
`( CA )
`
`( 72 )
`
`( 73 ) Assignee : UNIVERSITY HEALTH
`NETWORK , Toronto , ON ( CA )
`( 21 ) Appl . No . :
`15 / 328 , 214
`( 22 ) PCT Filed :
`Jul . 24 , 2015
`( 86 ) PCT No . :
`PCT / CA2015 / 000444
`$ 371 ( c ) ( 1 ) ,
`Jan . 23 , 2017
`( 2 ) Date :
`
`Related U . S . Application Data
`( 60 ) Provisional application No . 62 / 028 , 386 , filed on Jul .
`24 , 2014 .
`
`Publication Classification
`
`Int . Ci .
`G06T 7700
`A61B 5 / 00
`U . S . CI .
`
`( 2006 . 01 )
`( 2006 . 01 )
`. . G06T 7 / 0016 ( 2013 . 01 ) ; A61B 5 / 0071
`( 2013 . 01 ) ; A61B 5 / 445 ( 2013 . 01 ) ; A61B
`5 / 0077 ( 2013 . 01 ) ; G06T 2207 / 10064
`( 2013 . 01 ) ; G06T 2207 / 10024 ( 2013 . 01 ) ; G06T
`2207 / 30096 ( 2013 . 01 )
`ABSTRACT
`( 57 )
`Systems and methods for determining bacterial load in
`targets and tracking changes in bacterial load of targets over
`time are disclosed . An autofluorescence detection and col
`lection device includes a light source configured to directly
`illuminate at least a portion of a target and an area around the
`target with excitation light causing at least one biomarker in
`the illuminated target to fluoresce . Bacterial autofluores
`cence data regarding the illuminated portion of the target and
`the area around the target is collected and analyzed to
`determine bacterial load of the illuminated portion of the
`target and area around the target . The autofluorescence data
`may be analyzed using pixel intensity . Changes in bacterial
`load of the target over time may be tracked . The target may
`be a wound in tissue .
`
`12 13 14
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`15 16
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`17
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`18
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`
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`are the only
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`the
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`that
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`* * * * * * * *
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`prestatud
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`12 13 14 15 16 17 18
`lendemainlamla
`
`e
`
`L
`
`no
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`20
`
`FIG . 1
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`*
`
`FIG . 2
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`Red fluorescence
`
`Bacterial porphyrins
`
`collagen
`
`: :
`
`:
`
`: : .
`
`3
`
`.
`
`rent
`
`FIG . 3
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`antara Viewing Screen
`
`Qeveria
`
`Camera
`
`a
`
`Western
`
`FIG . 4
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`wa
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`oran
`EK
`ss
`
`* W
`Pre
`
`& Cosmos
`sambusogick
`8 . Ruos meios
`in WoW
`
`FIG . 5
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`Omission 91
`
`switch
`LED heart
`sin
`endosed
`
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`
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`bolder
`
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`
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`
`Phone 5S
`
`FIG . 6A
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`Vamosas
`
`FIG . 6B
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`START
`
`200
`
`ILLUMINATE TARGET
`
`COLLECT BACTERIAL
`AUTOFLUORESCENCE DATA
`
`220
`
`230
`
`ANALYZE DATA USING PIXEL
`INTENSITY
`
`ma 240
`
`DETERMINE BACTERIAL
`LOAD ON TARGET
`
`TRACK CHANGES IN
`BACTERIAL LOAD ON
`TARGET OVER TIME
`
`260
`
`FIG . 7A
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`START
`
`300
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`ILLUMINATE TARGET
`
`COLLECT DATA INCLUDING
`RGB IMAGES
`
`320
`
`330
`
`SEPARATE RGB IMAGES
`INTO RGB CHANNELS
`
`340
`
`CONVERT GREEN AND RED
`IMAGE CHANNELS TO GRAY
`SCALE
`
`wwwmasti mention 350
`
`COUNT PIXELS HAVING
`GRAY - SCALE INTENSITY
`ABOVE THRESHOLD
`
`360
`
`FIG . 7B
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`a
`
`Day
`
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`
`D ay 3
`
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`
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`Ogreus inoculation from day to day 10 . :
`Red arrow jidicates Kuprin teatritest . . .
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`DEVIL MESURSES
`
`yenide
`
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`t
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`1 day
`
`FIG . 10
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`Petitioner's Exhibit 1014
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`: :
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`a
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`green
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`red
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`green
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`tetekort
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`FIG . 12
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`Debridement
`
`Monitor Outcomes by
`Real - time Fluorescence
`Imaging
`
`Which
`Nound
`will heal ?
`
`WWW
`
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`
`Evaluation by
`Fluorescence
`Imaging
`
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`
`No healing
`
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`
`FIG . 13
`
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`Red
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`FIG . 14
`
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`mm
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`
`ratio ( a . u . ) ?????zed
`
`Red / Green
`
`Petitioner's Exhibit 1014
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`pred now
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`red arrow
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`6 ) b )
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`red arrow
`
`red arrow
`
`blue arrow
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`pink arTOWS
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`e
`
`yellow arrow
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`FIG . 15
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`blue arrow
`
`blue arrow
`
`FIG . 16
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`FIG . 17
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`Pre - clean
`
`Post - clean
`
`yellow arrow
`
`yellow arrow
`
`Pre clean
`
`Post - clean
`
`FIG . 18
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`Petitioner's Exhibit 1014
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`White
`
`Fluorescence
`
`Fluorescence
`
`Week 1 ( March 30 ,
`
`Week 2 ( April 6 ,
`
`Week 3 ( April 13 ,
`
`Week 4 ( April 20 ,
`
`Week 6 ( May 4 ,
`
`FIG . 19
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`Petitioner's Exhibit 1014
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`Week 1 ( March 30 .
`
`red arrow
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`blue arrow
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`
`FREE
`
`orange arrow
`
`Healing
`Wound
`wound Qred arrow boundary
`blue arrow
`
`orange arrow skin tissue
`
`FIG . 20
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`Petitioner's Exhibit 1014
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`
`FIG . 23
`
`Petitioner's Exhibit 1014
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`Petitioner's Exhibit 1014
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`Petitioner's Exhibit 1014
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`Measurement
`scale
`Information
`barcodes
`Multiplexed
`fluorescence dyes
`Multiple
`concentrations
`of various
`exogenous
`fluorescent
`dyes for
`multiplexed
`fluorescence
`intensity
`calibration
`
`1 cm
`
`- - -
`
`-
`
`-
`
`-
`
`-
`
`-
`
`Disposable " calibration " target
`
`Place disposable ' calibration '
`strip near wound site
`
`: NNN
`
`Select optimal
`fluorescence filter set
`
`Administer exogenous
`fluorescent agents
`
`4 .
`Collect WL + FL images Target Bx using fluorescence
`image - guidance
`
`FIG . 26
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`Petitioner's Exhibit 1014
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`Petitioner's Exhibit 1014
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`Petitioner's Exhibit 1014
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`Bacterial culture
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`2
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`Petitioner's Exhibit 1014
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`White Light
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`Petitioner's Exhibit 1014
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`chronie Wound
`
`. .
`
`. . .
`
`Treat
`Cause
`
`38ssere
`Demaku NSSEE
`
`Take patient histog
`
`Chmical assessment for diagnosis
`nchising assessment of
`NERDS STONES for clinical
`diagnosis of infection status ( adapted
`by Sibbala G et al : Wer Joranto )
`
`Describe wound / issue type :
`
`Determine amount of exudate on
`discharge bedrote tissue ano
`signs of Healing
`
`Make thermal reading of wount
`and surrounding normal tissues ,
`Hote wound odor and color
`
`BESS FL
`Place disnasable W
`sosoolion and sløsisity
`cakovation stronger wound
`on an excitation toht and
`imaging camera
`
`Use aktari brams to optimize
`Mevice to wound distance
`Brale WEF Images
`
`Colec w images at woum
`Select luorescence in the
`collet store AF images or WOUTO
`
`Proprietary software used to
`determine Buorescence
`osties of anavga
`:
`
`Measure vyouno dimensions
`Wheth length and depth or tracing
`the periphery using conventional
`
`3 No
`
`Is An Image contrast sütticieni
`Yes
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`wound culture specimen nollection
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`ago
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`Blaston
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`Use Imaging device or teal time nofk .
`vasive masassment wound
`and surrounding margins
`
`Administer exogerious
`uotest
`lecklackage
`contrast agent sowound stes
`Wak : for predetermined time
`beton Nuptescence : maguig
`
`Calibrate Collect Stare Fumage ,
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`Ose Ab image guidance to :
`target wound cukure
`Specimens collection
`die biopsy or fine needle
`gspttste )
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`Healing / remodeling
`intection status , and
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`expression :
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`* specimens to
`bacteriology lab : { for
`standard care
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`options ( ie , compression
`bandage therapya
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`FIG . 32
`
`Quantitative image
`analysis of corective :
`tissues :
`collagens :
`elastins )
`bacteria micrübes , and
`Wother fluorescent
`molecular biomarkers
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`Ofrequired
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`lele medicine
`för remote
`clinical
`consultation
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`Monitor
`Treatment
`Response
`
`Petitioner's Exhibit 1014
`Page 30 of 63
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`
`
`Patent Application Publication
`
`Aug . 17 , 2017 Sheet 30 of 34
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`US 2017 / 0236281 A1
`
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`Petitioner's Exhibit 1014
`Page 31 of 63
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`
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`Patent Application Publicati0ll
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`Aug . 17 , 2017 Sheet 31 0f 34
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`US 2017 / 0236281A1
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`Petitioner's Exhibit 1014
`Page 32 of 63
`
`
`
`Patent Application Publication
`
`Aug . 17 , 2017 Sheet 32 of 34
`
`US 2017 / 0236281 A1
`
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`Petitioner's Exhibit 1014
`Page 33 of 63
`
`
`
`Aug . 17 , 2017 Sheet 33 of 34
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`US 2017 / 0236281 A1
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`Patent Application Publication
`
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`
`Petitioner's Exhibit 1014
`Page 34 of 63
`
`
`
`Patent Application Publication
`
`Aug . 17 , 2017 Sheet 34 of 34
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`US 2017 / 0236281 A1
`
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`Petitioner's Exhibit 1014
`Page 35 of 63
`
`
`
`US 2017 / 0236281 A1
`
`Aug . 17 , 2017
`
`COLLECTION AND ANALYSIS OF DATA
`FOR DIAGNOSTIC PURPOSES
`This is application claims benefit to U . S . Provi
`[ 0001 ]
`sional Application No . 62 / 028 , 386 , filed Jul . 24 , 2014 , the
`entire content of which is incorporated by reference herein .
`TECHNICAL FIELD
`[ 0002 ] Devices and methods for collecting data for diag
`nostic purposes are disclosed . In particular , the devices and
`methods of the present application may be suitable for
`evaluating and tracking bacterial load in a wound over time .
`
`BACKGROUND
`[ 0003 ] Wound care is a major clinical challenge . Healing
`and chronic non - healing wounds are associated with a
`number of biological tissue changes including inflammation ,
`proliferation , remodeling of connective tissues and , a com
`mon major concern , bacterial infection . A proportion of
`wound infections are not clinically apparent and contribute
`to the growing economic burden associated with wound
`care , especially in aging populations . Currently , the gold
`standard wound assessment includes direct visual inspection
`of the wound site under white light combined with indis
`criminate collection of bacterial swabs and tissue biopsies
`resulting in delayed , costly and often insensitive bacterio
`logical results . This may affect the timing and effectiveness
`of treatment . Qualitative and subjective visual assessment
`only provides a gross view of the wound site , but does not
`provide information about underlying biological and
`molecular changes that are occurring at the tissue and
`cellular level . A relatively simple and complementary
`method that collects and analyzes ' biological and molecular
`information in real - time to provide early identification of
`such occult change and guidance regarding treatment of the
`same is desirable in
`clinical wound management . Early
`recognition of high - risk wounds may guide therapeutic
`intervention and provide response monitoring over time ,
`thus greatly reducing both morbidity and mortality due
`especially to chronic wounds .
`SUMMARY
`[ 0004 ] In accordance with various exemplary embodi
`ments , a method of determining bacterial load of a target
`from fluorescent image data of the target is provided . The
`method comprises identifying a region of interest in a
`fluorescent image of a target , separating RGB images into
`individual channels , converting individual green and red
`image channels from the RGB image to gray scale , and
`counting pixels whose gray scale intensity was above a
`given threshold .
`[ 0005 ]
`In accordance with another aspect of the present
`teachings , a method of obtaining diagnostic data regarding
`a target is provided . The method comprises directly illumi
`nating at least a portion of a target with a homogeneous field
`of excitation light emitted by at least one light source
`connected to a housing of a handheld device , the housing
`including an enclosure for receiving a wireless communi
`cation device having a digital camera . The at least one light
`source emits at least one wavelength or wavelength band
`causing at least one biomarker in the illuminated portion of
`the target to fluoresce . The method further comprises col
`lecting bacterial autofluorescence data regarding the illumi
`
`nated portion of the target with an image sensor of the digital
`camera of the wireless communication device . The wireless
`communication device is secured in the housing . The
`method also comprises analyzing the collected bacterial
`autofluorescence data using pixel intensity to determine
`bacterial load of the illuminated portion of the target .
`[ 0006 ]
`In accordance with a further aspect of the present
`disclosure , a system for acquiring data regarding a wound in
`tissue is disclosed . The system comprises at least one light
`source configured to directly illuminate a target surface with
`a homogeneous field of excitation light . The target surface
`includes at least a portion of a wound and an area around the
`wound . An optical sensor is configured to detect signals
`responsive to illumination of the illuminated portion of the
`wound and the area around the wound . Each detected signal
`is indicative of at least one of endogenous fluorescence ,
`exogenous fluorescence , absorbance , and reflectance in the
`illuminated portion of the wound and the area around the
`wound . A processor is configured to receive the detected
`signals and to analyze the detected signal data using pixel
`intensity and to output data regarding the bacterial load of
`the illuminated portion of the wound and area around the
`wound . The system further comprises a display for display
`ing the output data regarding the illuminated portion of the
`wound and the area around the wound output by the pro
`cessor .
`[ 0007 ]
`In accordance with yet another aspect of the pres
`ent disclosure , a portable , handheld device for imaging and
`collection of data relating to a wound in tissue is disclosed .
`The device comprises a housing comprising an enclosure
`configured to receive a mobile communication device and at
`least one light source coupled to the housing and configured
`to directly illuminate at least a portion of a wound and an
`area around the wound with a homogeneous field of light . A
`mobile communication device is secured in the enclosure of
`the housing , the mobile communication device comprising
`an embedded digital camera and having a touchscreen
`display disposed on a first side of the device and a lens of the
`camera disposed on a second side of the device opposite the
`first side . The mobile communication device is received in
`the housing such that an image sensor of the digital camera
`is positioned to detect optical signals responsive to illumi
`nation of the portion of the wound and the area around the
`wound with the homogeneous field of light , each of the
`optical signals being indicative of at least one of endogenous
`fluorescence , exogenous fluorescence , reflectance , and
`absorbance in the illuminated portion of the wound and the
`area around the wound . When the mobile communication
`device is secured in the enclosure , at least a portion of the
`touchscreen display is accessible and viewable by a user .
`The device further comprises a processor configured to
`receive the detected optical signals , to analyze detected
`signal data using pixel intensity , and to output data regarding
`the bacterial load of the illuminated portion of the wound
`and area around the wound .
`[ 0008 ] .
`In accordance with another aspect of the present
`disclosure , a method of obtaining diagnostic data regarding
`a target is provided . The method comprises directly illumi
`nating at least a portion of a target and an area around the
`target with a homogeneous field of excitation light emitted
`by at least one light source connected to a housing of a
`handheld device . The housing includes an enclosure for
`receiving a wireless communication device having a digital
`camera . The at least one light source emits at least one
`
`Petitioner's Exhibit 1014
`Page 36 of 63
`
`
`
`US 2017 / 0236281 A1
`
`Aug . 17 , 2017
`
`wavelength or wavelength band causing at least one bio -
`marker in the illuminated portion of the target and area
`around the target to fluoresce . The method further comprises
`collecting bacterial autofluorescence data regarding the illu
`minated portion of the target and the area around the target
`with an image sensor of the digital camera of the wireless
`communication device . The wireless communication device
`is secured in the housing . The method further comprises
`analyzing the collected bacterial autofluorescence data to
`determine bacterial load of the illuminated portion of the
`target and area around the target , and tracking changes in
`bacterial load of the target over time .
`[ 0009 ] Additional objects and advantages of the disclosure
`will be set forth in part in the description which follows , and
`in part will be obvious from the description , or may be
`learned by practice of the disclosure . The objects and
`advantages of the disclosure will be realized and attained by
`means of the elements and combinations particularly pointed
`out in the appended claims .
`[ 0010 ]
`It is to be understood that both the foregoing
`general description and the following detailed description
`are exemplary and explanatory only and are not restrictive of
`the disclosure , as claimed .
`[ 0011 ] The accompanying drawings , which are incorpo
`rated in and constitute a part of this specification , illustrate
`embodiments of the disclosure and together with the
`description , serve to explain the principles of the disclosure .
`BRIEF DESCRIPTION OF DRAWINGS
`0012 ] At least some features and advantages will be
`apparent from the following detailed description of embodi
`ments consistent therewith , which description should be
`considered with reference to the accompanying drawings ,
`wherein :
`[ 0013 ] FIG . 1 is a schematic diagram of a device for
`fluorescence - based monitoring ;
`[ 0014 ] FIG . 2 shows an example of a clinical wound care
`facility using a device for fluorescence - based monitoring ;
`[ 0015 ] FIG . 3 shows images of a muscle surface of a pig
`meat sample , demonstrating the use of a device for fluores
`cence - based monitoring for autofluorescence detection of
`connective tissues and bacteria ;
`[ 0016 ]
`FIG . 4 shows images of a hand - held embodiment
`of a device for fluorescence - based monitoring ;
`[ 0017 )
`FIG . 5 shows an alternate embodiment of a hand
`held device for obtaining white light and fluorescent light
`data from a target ;
`[ 0018 ] FIGS . 6A and 6B show another alternative embodi
`ment of a handheld device for obtaining data regarding a
`target , the handheld device incorporating an iPhone ;
`[ 0019 ] FIGS . 7A and 7B illustrate exemplary methods of
`determining bacterial load of a target ;
`[ 0020 ]
`FIG . 8 shows representative white light ( WL ) and
`fluorescent ( FL ) images for a single mouse tracked over 10
`days ;
`[ 0021 ] FIG . 9 illustrates preclinical data which show that
`pathogenic bacterial autofluorescence ( AF ) intensity corre
`lates with bacterial load in vivo ;
`10022 ] FIG . 10 shows images of live bacterial cultures
`captured using a device for fluorescence - based monitoring ;
`[ 0023 ] FIG . 11 shows an example of bacterial monitoring
`using a device for fluorescence - based monitoring ;
`
`[ 0024 ] FIG . 12 shows images of a simulated animal
`wound model , demonstrating non - invasive autofluorescence
`detection of bacteria using a device for fluorescence - based
`monitoring ;
`[ 0025 ] . FIG . 13 illustrates an example of monitoring of a
`chronic wound ;
`10026 ] FIGS . 14 - 28 show examples of the use of a device
`for fluorescence - based monitoring for imaging wounds and
`conditions in clinical patients ;
`[ 0027 ]
`FIG . 29 shows images of a skin surface of a pig
`meat sample , demonstrating non - invasive autofluorescence
`detection of collagen and various bacterial species using a
`device for fluorescence - based monitoring ;
`[ 0028 ]
`FIG . 30 shows images and spectral plots demon
`strating the use of a device for fluorescence - based monitor
`ing to detect fluorescence from bacteria growing in agar
`plates and on the surface a simulated wound on pig meat ;
`[ 0029 ]
`FIG . 31 shows images demonstrating use of a
`device for fluorescence - based monitoring for imaging of
`blood and microvasculature ;
`[ 0030 ] FIG . 32 is a flowchart illustrating the management
`of a chronic wound using a device for fluorescence - based
`monitoring ;
`[ 0031 ]
`FIG . 33 illustrates the phases of wound healing
`with time ;
`[ 0032 ]
`FIG . 34 is a table showing examples of tissue ,
`cellular and molecular biomarkers known to be associated
`with wound healing ;
`[ 0033 ]
`FIG . 35 is a diagram comparing a healthy wound to
`a chronic wound ;
`[ 0034 ] FIG . 36 shows images demonstrating the use of a
`device for fluorescence - based monitoring in imaging a
`mouse model ; and
`[ 0035 ]
`FIG . 7 shows an example of the use of a device for
`fluorescence - based monitoring for imaging small animal
`models ;
`[ 0036 ] FIG . 38 shows an example of a kit including a
`device for fluorescence - based monitoring .
`[ 0037 ] Although the following detailed description makes
`reference to illustrative embodiments , many alternatives ,
`modifications , and variations thereof will be apparent to
`those skilled in the art . Accordingly , it is intended that the
`claimed subject matter be viewed broadly .
`DETAILED DESCRIPTION
`[ 0038 ] Reference will now be made in detail to various
`embodiments , examples of which are illustrated in the
`accompanying drawings . The various exemplary embodi
`ments are not intended to limit the disclosure . To the
`contrary , the disclosure is intended to cover alternatives ,
`modifications , and equivalents .
`[ 0039 ] Conventional clinical assessment methods of acute
`and chronic wounds continue to be suboptimal . Such assess
`ment methods usually are based on a complete patient
`history , qualitative and subjective clinical assessment with
`simple visual appraisal using ambient white light and the
`“ naked eye , ' and can sometimes involve the use of color
`photography to capture the general appearance of a wound
`under white light illumination . Regular re - assessment of
`progress toward healing and appropriate modification of the
`intervention is also necessary . Wound assessment terminol
`ogy is non - uniform , many questions surrounding wound
`assessment remain unanswered , agreement has yet to be
`
`Petitioner's Exhibit 1014
`Page 37 of 63
`
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`US 2017 / 0236281 A1
`
`Aug . 17 , 2017
`
`reached on the key wound parameters to measure in clinical
`practice , and the accuracy and reliability of available wound
`assessment techniques vary .
`[ 0040 ] Visual assessment is frequently combined with
`swabbing and / or tissue biopsies for bacteriological culture
`for diagnosis . Bacterial swabs are collected at the time of
`wound examination and have the noted advantage of pro
`viding identification of specific bacterial / microbial species .
`However , multiple swabs and / or biopsies often are collected
`randomly from the wound site , and some swabbing tech
`niques may in fact spread the microorganisms around with
`the wound during the collection process thus affecting
`patient healing time and morbidity . This may be a problem
`especially with large chronic ( non - healing ) wounds where
`the detection yield for bacterial presence using current
`swabbing and biopsy protocols is suboptimal ( diagnostically
`insensitive ) , despite many swabs being collected .
`[ 0041 ] Thus , current methods for obtaining swabs or tis
`sue biopsies from the wound site for subsequent bacterio
`logical culture are based on a non - targeted or ' blind ' swab
`bing or punch biopsy approach , and have not been optimized
`to minimize trauma to the wound or to maximize the
`diagnostic yield of the bacteriology tests . In addition , bac
`teriological culture results often take about 2 - 3 days to come
`back from the laboratory and can be inconclusive , thus
`delaying accurate diagnosis and treatment . Thus , conven
`tional methods of obtaining bacterial swabs do not neces
`sarily provide r